Showing : predict coding • reset
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predictCoding errors with: sequence ^1$ not found
variantannotation predict coding locateVariants granges
7.3 years ago tony j • 0
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2
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1.2k
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predictCoding with multiple samples
predict coding variantannotation
updated 9.5 years ago by ★ 6.8k • written 9.5 years ago by • 0
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trouble with predictCoding( function
snp variantannotation predict coding
9.7 years ago vakul.mohanty ▴ 20
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2.7k
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predictCoding error DNAStringSet_translate
variantannotation predict coding
updated 9.9 years ago by ★ 6.8k • written 9.9 years ago by ▴ 40
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how to save file on local disk after applying predictCoding() function?
vcf predict coding save file VariantAnnotation
updated 10.4 years ago by ▴ 90 • written 10.4 years ago by ▴ 10
5 results • Page 1 of 1
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Comment: DESeq2 adujsted p-value cutoff seemingly not working by 980linnet • 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package by PW • 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
Comment: Why the order of sample names in the beta matrix affect the analysis results of by 81becky • 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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